Jeff M. Coller: search on Z-Library

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1

Codon Optimality Is a Major Determinant of mRNA Stability

Presnyak, Vladimir, Alhusaini, Najwa, Chen, Ying-Hsin, Martin, Sophie, Morris, Nathan, Kline, Nicholas, Olson, Sara, Weinberg, David, Baker, Kristian E., Graveley, Brenton R., Coller, Jeff

Journal:

Year:

2015

Language:

english

File:

PDF, 3.30 MB

english, 2015

2

Codon optimality, bias and usage in translation and mRNA decay

Hanson, Gavin, Coller, Jeff

Journal:

Nature Reviews Molecular Cell Biology

Year:

2017

Language:

english

File:

PDF, 1.46 MB

english, 2017

3

Co-translational mRNA decay in Saccharomyces cerevisiae

Hu, Wenqian, Sweet, Thomas J., Chamnongpol, Sangpen, Baker, Kristian E., Coller, Jeff

Journal:

Year:

2009

Language:

english

File:

PDF, 584 KB

english, 2009

4

E UKARYOTIC mRNA D ECAPPING

Coller, Jeff, Parker, Roy

Journal:

Annual Review of Biochemistry

Year:

2004

Language:

english

File:

PDF, 1018 KB

english, 2004

5

RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts

Geisler, Sarah, Coller, Jeff

Journal:

Nature Reviews Molecular Cell Biology

Year:

2013

Language:

english

File:

PDF, 1009 KB

english, 2013

6

Attenuated Codon Optimality Contributes to Neural-Specific mRNA Decay in Drosophila

Burow, Dana A., Martin, Sophie, Quail, Jade F., Alhusaini, Najwa, Coller, Jeff, Cleary, Michael D.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.94 MB

english, 2018

7

Lso2 is a conserved ribosome-bound protein required for translational recovery in yeast

Wang, Yinuo J., Vaidyanathan, Pavanapuresan P., Rojas-Duran, Maria F., Udeshi, Namrata D., Bartoli, Kristen M., Carr, Steven A., Gilbert, Wendy V., Coller, Jeff

Journal:

Year:

2018

Language:

english

File:

PDF, 18.37 MB

english, 2018

8

Molecular Biology of Long Non-coding RNAs || Dysregulation of Long Non-coding RNAs in Human Disease

Khalil, Ahmad M., Coller, Jeff

Year:

2013

Language:

english

File:

PDF, 578 KB

english, 2013

9

A Method that Will Captivate U

Martin, Sophie, Coller, Jeff

Journal:

Year:

2015

Language:

english

File:

PDF, 191 KB

english, 2015

10

A Universal Code for mRNA Stability?

Chen, Ying-Hsin, Coller, Jeff

Journal:

Trends in Genetics

Year:

2016

Language:

english

File:

PDF, 365 KB

english, 2016

11

The DEAD-Box Protein Dhh1p Couples mRNA Decay and Translation by Monitoring Codon Optimality

Radhakrishnan, Aditya, Chen, Ying-Hsin, Martin, Sophie, Alhusaini, Najwa, Green, Rachel, Coller, Jeff

Journal:

Year:

2016

Language:

english

File:

PDF, 2.35 MB

english, 2016

12

mRNA decapping in 3D

Journal:

Nature Structural and Molecular Biology

Year:

2016

Language:

english

File:

PDF, 531 KB

english, 2016

13

Nonsense-mediated mRNA decapping occurs on polyribosomes in Saccharomyces cerevisiae

Hu, Wenqian, Petzold, Christine, Coller, Jeff, Baker, Kristian E

Journal:

Nature Structural and Molecular Biology

Year:

2010

Language:

english

File:

PDF, 752 KB

english, 2010

14

Structural and molecular mechanisms for the control of eukaryotic 5′–3′ mRNA decay

Mugridge, Jeffrey S., Coller, Jeff, Gross, John D.

Journal:

Nature Structural and Molecular Biology

Year:

2018

Language:

english

File:

PDF, 1.73 MB

english, 2018

15

mRNA association by aminoacyl tRNA synthetase occurs at a putative anticodon mimic and autoregulates translation in response to tRNA levels

Levi, Ofri, Arava, Yoav, Coller, Jeff

Journal:

Year:

2019

Language:

english

File:

PDF, 4.44 MB

english, 2019

16

Quantitative tRNA-sequencing uncovers metazoan tissue-specific tRNA regulation

Pinkard, Otis, McFarland, Sean, Sweet, Thomas, Coller, Jeff

Journal:

Nature Communications

Year:

2020

File:

PDF, 1.29 MB

2020

17

What comes first: translational repression or mRNA degradation? The deepening mystery of microRNA function

Hu, Wenqian, Coller, Jeff

Journal:

Year:

2012

Language:

english

File:

PDF, 387 KB

english, 2012

18

Staufen- and FMRP-Containing Neuronal RNPs Are Structurally and Functionally Related to Somatic P Bodies

Scott A. Barbee, Patricia S. Estes, Anne-Marie Cziko, Jens Hillebrand, Rene A. Luedeman, Jeff M. Coller, Nick Johnson, Iris C. Howlett, Cuiyun Geng, Ryu Ueda, Andrea H. Brand, Sarah F. Newbury, James

Journal:

Year:

2006

Language:

english

File:

PDF, 1.20 MB

english, 2006

19

ACTIVE TGF-BETA-1 IS MORE COMMONLY DETECTABLE IN PLASMA OF PATIENTS WITH AORTIC STENOSIS THAN CARDIAC CATHETERIZATION CONTROLS

Bander, Jeff, Mauer, Andreas, Huffman, Christopher, Sharma, Samin, Coller, Barry, Ahamed, Jasimuddin

Journal:

Journal of the American College of Cardiology

Year:

2011

Language:

english

File:

PDF, 264 KB

english, 2011

20

The DHH1/RCKp54 family of helicases: An ancient family of proteins that promote translational silencing

Presnyak, Vlad, Coller, Jeff

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

Year:

2013

Language:

english

File:

PDF, 533 KB

english, 2013

21

Short poly(A) tails are a conserved feature of highly expressed genes

Lima, Sarah Azoubel, Chipman, Laura B, Nicholson, Angela L, Chen, Ying-Hsin, Yee, Brian A, Yeo, Gene W, Coller, Jeff, Pasquinelli, Amy E

Journal:

Nature Structural and Molecular Biology

Year:

2017

Language:

english

File:

PDF, 938 KB

english, 2017

22

Decapping of Long Noncoding RNAs Regulates Inducible Genes

Sarah Geisler, Lisa Lojek, Ahmad M. Khalil, Kristian E. Baker, Jeff Coller

Journal:

Year:

2012

Language:

english

File:

PDF, 1.42 MB

english, 2012

23

The many routes to regulating mRNA translation

Kristian E Baker, Jeff Coller

Journal:

Year:

2006

Language:

english

File:

PDF, 95 KB

english, 2006

24

[Methods in Enzymology] RNA Turnover in Eukaryotes: Nucleases, Pathways and Analysis of mRNA Decay Volume 448 || Chapter 14 Methods to Determine mRNA Half‐Life in Saccharomyces cerevisiae

Year:

2008

Language:

english

File:

PDF, 403 KB

english, 2008

25

RNA research in the rustbelt

Coller, Jeff, Rueda, David

Journal:

Year:

2009

Language:

english

File:

PDF, 259 KB

english, 2009

26

General Translational Repression by Activators of mRNA Decapping

Jeff Coller, Roy Parker

Journal:

Year:

2005

Language:

english

File:

PDF, 647 KB

english, 2005

27

Alternate Endings: A New Story for mRNA Decapping

Sarah Geisler, Jeff Coller

Journal:

Year:

2010

Language:

english

File:

PDF, 248 KB

english, 2010

28

PAN-orama: three convergent views of a eukaryotic deadenylase

Martin, Sophie, Coller, Jeff

Journal:

Nature Structural and Molecular Biology

Year:

2014

Language:

english

File:

PDF, 286 KB

english, 2014

29

Translation elongation and mRNA stability are coupled through the ribosomal A-site

Hanson, Gavin, Alhusaini, Najwa, Morris, Nathan, Sweet, Thomas, Coller, Jeff

Journal:

Year:

2018

Language:

english

File:

PDF, 2.49 MB

english, 2018

30

Stress-Induced Nuclear RNA Degradation Pathways Regulate Yeast Bromodomain Factor 2 to Promote Cell Survival

Roy, Kevin, Chanfreau, Guillaume, Coller, Jeff

Journal:

Year:

2014

Language:

english

File:

PDF, 1.62 MB

english, 2014

31

A novel origin for granulovacuolar degeneration in aging and Alzheimer's disease: parallels to stress granules

Castellani, Rudy J, Gupta, Yashi, Sheng, Baiyang, Siedlak, Sandra L, Harris, Peggy LR, Coller, Jeff M, Perry, George, Lee, Hyoung-gon, Tabaton, Massimo, Smith, Mark A, Wang, Xinglong, Zhu, Xiongwei

Journal:

Laboratory Investigation

Year:

2011

Language:

english

File:

PDF, 649 KB

english, 2011

32

Codon and amino acid content are associated with mRNA stability in mammalian cells

Forrest, Megan E., Pinkard, Otis, Martin, Sophie, Sweet, Thomas J., Hanson, Gavin, Coller, Jeff, Kim, Yoon Ki

Journal:

Year:

2020

File:

PDF, 3.46 MB

2020

33

Molecular Biology of Long Non-coding RNAs ||

Khalil, Ahmad M., Coller, Jeff

Year:

2013

Language:

english

File:

PDF, 3.50 MB

english, 2013

34

The analysis of translational mechanisms that modulate gene expression

Coller, Jeff, Grayhack, Elizabeth J

Journal:

Year:

2018

Language:

english

File:

PDF, 265 KB

english, 2018

35

Translation of Small Open Reading Frames within Unannotated RNA Transcripts in Saccharomyces cerevisiae

Smith, Jenna E., Alvarez-Dominguez, Juan R., Kline, Nicholas, Huynh, Nathan J., Geisler, Sarah, Hu, Wenqian, Coller, Jeff, Baker, Kristian E.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.84 MB

english, 2014

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